dynamo.tl.run_velocyto

dynamo.tl.run_velocyto(adata)[source]

Run velocyto over the AnnData object.

  1. convert adata to vlm data

  2. set up PCA, UMAP, etc.

  3. estimate the gamma parameter

Parameters:

adata (AnnData) – An AnnData object.

Return type:

AnnData

Returns:

The updated AnnData object.