dynamo.tl.generalized_diffusion_map¶

dynamo.tl.generalized_diffusion_map(adata, **kwargs)[source]¶

Apply the diffusion map algorithm on the transition matrix build from Itô kernel.

Update the AnnData object with X_diffusion_map embedded in .obsm attribute.

Parameters:

adata (AnnData) – An AnnData object with the constructed transition matrix.
kwargs – Additional kwargs that will be passed to diffusion_map_embedding function.

Return type:

None