Datasets

Import dynamo as:

import dynamo as dyn

Built in data

Here we host some published datasets that are useful for benchmarking and testing models.

sample_data.scNT_seq_neuron_splicing	The neuron splicing data is from Qiu, et al (2020).
sample_data.scNT_seq_neuron_labeling	The neuron splicing data is from Qiu, et al (2020).
sample_data.zebrafish	The zebrafish is from Saunders, et al (2019).
sample_data.DentateGyrus	The Dentate Gyrus dataset used in https://github.com/velocyto-team/velocyto-notebooks/blob/master/python/DentateGyrus.ipynb.
sample_data.Haber	The Haber dataset used in https://github.com/velocyto-team/velocyto-notebooks/blob/master/python/Haber_et_al.ipynb
sample_data.hgForebrainGlutamatergic	The hgForebrainGlutamatergic dataset used in https://github.com/velocyto-team/velocyto-notebooks/blob/master/python/hgForebrainGlutamatergic.ipynb
sample_data.chromaffin	The chromaffin dataset used in http://pklab.med.harvard.edu/velocyto/notebooks/R/chromaffin2.nb.html
sample_data.BM	The BM dataset used in http://pklab.med.harvard.edu/velocyto/notebooks/R/SCG71.nb.html
sample_data.pancreatic_endocrinogenesis	Pancreatic endocrinogenesis.
sample_data.DentateGyrus_scvelo	The Dentate Gyrus dataset used in https://github.com/theislab/scvelo_notebooks/tree/master/data/DentateGyrus.
sample_data.scEU_seq_rpe1	Download rpe1 dataset from Battich, et al (2020) via a figshare link.
sample_data.scEU_seq_organoid	Download organoid dataset from Battich, et al (2020) via a figshare link.
sample_data.hematopoiesis	Processed dataset originally from https://pitt.box.com/v/hematopoiesis-processed.
sample_data.hematopoiesis_raw	Processed dataset originally from https://pitt.box.com/v/hematopoiesis-processed.