# Documentation

## Dynamo: Mapping Vector Field of Single Cells

Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction, potential landscape mapping, differential geometry analyses, and most probably paths / in silico perturbation predictions.

![dyname-abstract](https://user-images.githubusercontent.com/7456281/152110270-7ee1b0ed-1205-495d-9d65-59c7984d2fa2.png)

If you find dynamo to be useful for your research, please consider citing the [dynamo manuscript](https://www.sciencedirect.com/science/article/pii/S0092867421015774)

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:gutter: 2

:::{grid-item-card} Installation {octicon}`plug;1em;`
:link: installation
:link-type: doc

New to _dynamo_? Check out the installation guide.
:::

:::{grid-item-card} User guide {octicon}`info;1em;`
:link: user_guide/index
:link-type: doc

The user guide provides distilled mathematical descriptions of
the models implemented in dynamo and connects the math
with the code.
:::

:::{grid-item-card} API reference {octicon}`book;1em;`
:link: api/index
:link-type: doc

The API reference contains a detailed description of
the dynamo API.
:::

:::{grid-item-card} Tutorials {octicon}`play;1em;`
:link: tutorials/index
:link-type: doc

The tutorials walk you through real-world applications of dynamo.
:::

:::{grid-item-card} Discussion {octicon}`megaphone;1em;`
:link: https://github.com/aristoteleo/dynamo-release/discussions

Need help? Reach out on our forum to get your questions answered!
:::

:::{grid-item-card} GitHub {octicon}`mark-github;1em;`
:link: https://github.com/aristoteleo/dynamo-release/

Find a bug? Interested in improving dynamo? Checkout our GitHub for the latest developments.
:::
::::

```{toctree}
:hidden: true
:maxdepth: 3
:titlesonly: true

introduction/index
installation
user_guide/index
tutorials/index
faq
api/index
developer
changelog.md
references
Discussion <https://github.com/aristoteleo/dynamo-release/discussions>
GitHub <https://github.com/aristoteleo/dynamo-release>
```